PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0269.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 790aa    MW: 86605.2 Da    PI: 5.604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0269.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18184283198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kaladp0042s0269.3.p 184 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 272
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kaladp0042s0269.3.p 273 -PEGKLVMGFRK 283
                          .77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-30177285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20181283IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-22182283No hitNo description
SMARTSM010197.6E-21184285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251184285IPR003340B3 DNA binding domain
PfamPF023621.2E-15184283IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149405455IPR011124Zinc finger, CW-type
PfamPF074967.3E-12410452IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MQWREAPNLY NSLLAQSEAH TRGPCDGGVS NGLNRYYSNE VFPLGSLEKQ SRREIDWSMR  60
RIARTSEIHE NGNSGVLMEM LSAKENSSAL RLEPLLKTSS ANESNCEMTA SGSLLRAAPL  120
SQPPKSFHSN HSSEFDPCSE TPVQNGRSRG DGRNKNQLLT RYLPRTTDEE LQKIAGSSEI  180
KPLFEKTLSA SDAGRIGRLV VPKKCAEAYF PHISQPEGLP LKVQDVKGKE WVFQFRFWPN  240
NNSRMYVLEG VTSYIQSMQL LAGDKVTFSR LEPEGKLVMG FRKASNGSTD LDDEPNKISN  300
NGDASARINF NLSRADKSGY IAKDIMNVKS SVSRKRKSST FSSNRHLLFE SMDVCELKIT  360
LEEAQRLIRP SPNHLSHVGI VENEIEEFED CPVIGKPTIF TTDQMGESIQ WAQCEDCLKW  420
RRLPADALLP AKWICSKNKW DLARSTCSSP QDISDEQLDN LLFPKNQSVS KKMRAANQEL  480
ETVEGLEGLD ALANLAILGE GQAIASSGHI TTKHPRHKMG CSCIVCIQPP SGKGLKHKQT  540
CDCTVCLTVK RRFQTLMLRR EKKQQEKDAE AASEKHQGCS LLIEKSPEND PLTQEDSSAA  600
TPTLKEVTDE GSVDISFGKE SSASTLKGQI DLNIKPERDD PLISSELDTL MFSYNTAEAV  660
DQMQSSIHCA SAEIVRDPTQ TVEVVDGTGS ASVTNQLVAA PPADAHPEKE SSPTVKVEET  720
IVNSTGTTSV TNQLVAAPPA DAHPEKESSP AVKVVEAIID GTDTARITNQ LAAARPDEES  780
TPTVTTTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-1518329213123DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G41e-167Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y80.0A0A067G7Y8_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-141HSI2-like 1